PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00330.1
Common NameZOSMA_16G00330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 331aa    MW: 36642.4 Da    PI: 4.7349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10154197654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y k+L
  Zosma16g00330.1 154 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYTKEL 197
                      589*********************66......**************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-14151211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8154197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-4155209No hitNo description
Gene3DG3DSA:4.10.280.106.4E-15155211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00144256284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELDENGFLE ELLGIRRDSW ENFPSSMADL FPSDCFEDAT NNAEPSSIRL PPPLQPTANV  60
IPNLGSAASQ EMVYSSCLFG NGFDGGVAGV EDVCLDGVIC KVEAGVHQTH QHQHQPVPQG  120
AGFEILSSSS TSSCCAERKM RMMRKVEGQP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  180
MDRTSILGDT IDYTKELLEK IKVLQEEIEA TSSITTTTTS DDPRPQRENT FKELNPNGML  240
ARNTPQFDVE RREVDTRVEI CCAGKPGLLL STVSTLEALG LEIQQCVVSC FNEFGMQASC  300
SEEMEQRTVI STDEIKQNLF RNAGYGGRCM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156163ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935191.11e-108PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL17e-77BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0K9PSX90.0A0A0K9PSX9_Z
STRINGGSMUA_Achr8P34120_0011e-103(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-76beta HLH protein 93